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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7238977_7239308_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7238977 - 7239308
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTACT
5'SS Class:
major
3'SS Sequence:
GTGTTGCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
GTTCTTTTATAT
Flanking Amino Acid:
ISKETLELFSDDIEKRKRLR
Intron Amino Acid Position:
594

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.2
76.5
38.7
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
67.1
0.38
0.9
58.4
43.1
Minor 5ss
33.3
-1.9
2.9
44
43.3
Minor BPS
51.7
0.13
1.7
71.01
39.8

Associated Gene:

Gene:
RNF10
Ensembl Gene ID:
ENSAPLG00000015268
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015941
7235901 - 7252950
17050