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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7241089_7241244_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7241089 - 7241244
Intron Length:
156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCCGTTGTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
GTGGTACTAACT
Flanking Amino Acid:
TEPAVLHEKKCGMEYLSAFD
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
77.5
32.9
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
73.6
0.53
0.9
68.5
37.3
Minor 5ss
29.2
-2.4
2.9
35.3
41.5
Minor BPS
46.7
-0.1
2
66.19
44.1

Associated Gene:

Gene:
RNF10
Ensembl Gene ID:
ENSAPLG00000015268
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015941
7235901 - 7252950
17050