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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7242080_7243620_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7242080 - 7243620
Intron Length:
1541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTGTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AAGATATTAATG
Flanking Amino Acid:
MNVVQPVHVGDDQHSQYSKL
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.7
84.8
25.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
81.1
0.7
0.9
80
32
Minor 5ss
31.8
-2.1
3.3
42.9
44.7
Minor BPS
47.9
-0.3
1.6
48.6
38.9

Associated Gene:

Gene:
RNF10
Ensembl Gene ID:
ENSAPLG00000015268
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015941
7235901 - 7252950
17050