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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7243758_7243844_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7243758 - 7243844
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTACGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCCTCTTTACGT
Flanking Amino Acid:
YGSVHKKDLKSVIAMETRQY
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.6
37.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
79.5
0.66
0.9
73
37
Minor 5ss
31.2
-2.1
3.5
46.7
48.6
Minor BPS
53.5
0.19
2
70.57
47

Associated Gene:

Gene:
RNF10
Ensembl Gene ID:
ENSAPLG00000015268
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015941
7235901 - 7252950
17050