About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7255566_7256817_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7255566 - 7256817
Intron Length:
1252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATGTC
5'SS Class:
major
3'SS Sequence:
GTCTTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGACAAT
U12 Branch Point Sequence:
CAATTCCTAGCG
Flanking Amino Acid:
EREIAALIKREFEKRYSPTW
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
73
36.9
Major BPS
46.5
-0.2
1.3
50.9
41
Major PPT
82.8
0.74
0.8
77.3
31.5
Minor 5ss
36.2
-1.6
3.4
43.7
44.2
Minor BPS
45.8
-0.4
1.9
49.88
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018997
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048089
7255428 - 7256949
1522