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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7257872_7259173_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7257872 - 7259173
Intron Length:
1302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
ATCTATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
GCGTTCTTAATT
Flanking Amino Acid:
EKDIAAHIKKEFDKKYNPTW
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
76.4
32.8
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
82.7
0.74
0.8
77
36.2
Minor 5ss
28.3
-2.5
3.6
40.1
46.3
Minor BPS
71.2
0.74
1.2
75.75
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020807
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018948
7257734 - 7259305
1572