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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7261070_7261481_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7261070 - 7261481
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGGGGG
5'SS Class:
major
3'SS Sequence:
TCTTTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TCTTTCTTTACA
Flanking Amino Acid:
NVSEEERREKIYQVFENVAE
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
57.6
41.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
92.2
0.95
0.6
87.4
23.1
Minor 5ss
24.9
-2.9
3.4
28.6
37.7
Minor BPS
71
0.65
1.6
78.67
37.8

Associated Gene:

Gene:
COQ5
Ensembl Gene ID:
ENSAPLG00000015103
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015764
7260916 - 7268683
7768