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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7266423_7268059_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7266423 - 7268059
Intron Length:
1637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTGTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TTCTACAGAAAC
Flanking Amino Acid:
GIRNVTRIDLALQEAYRVLK
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
74.9
36.2
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
78
0.63
0.9
76.1
37.8
Minor 5ss
40.7
-1
2.8
49.7
41.9
Minor BPS
46.7
-0.2
2
63.04
41.5

Associated Gene:

Gene:
COQ5
Ensembl Gene ID:
ENSAPLG00000015103
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015764
7260916 - 7268683
7768