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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7270268_7271138_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7270268 - 7271138
Intron Length:
871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CTATTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAA
U12 Branch Point Sequence:
CAATGCTAAATT
Flanking Amino Acid:
EKDIAAHIKKEFDKKYNPTW
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
70.1
0.5
1.1
69.9
35.3
Major PPT
85.5
0.8
0.8
80.9
30.9
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
48.7
-0
2.1
65.45
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016659
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030388
7270130 - 7271270
1141