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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7278497_7278777_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7278497 - 7278777
Intron Length:
281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGGCCA
5'SS Class:
major
3'SS Sequence:
TCCTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TCAAATTTAACT
Flanking Amino Acid:
LFKRYQLCVQKAIKEKDIPI
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
59.5
41.1
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
87.5
0.84
0.7
80
32
Minor 5ss
24.5
-2.9
3.2
30.6
42.8
Minor BPS
62
0.45
1.6
74.56
41.9

Associated Gene:

Gene:
TRIAP1
Ensembl Gene ID:
ENSAPLG00000027294
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045410
7278350 - 7278861
512