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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7282894_7283006_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7282894 - 7283006
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACGGGG
5'SS Class:
major
3'SS Sequence:
GCCGTGCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAG
U12 Branch Point Sequence:
CGGGCCTGAGCC
Flanking Amino Acid:
MAAGAHEAGGARLWRTLSFV
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.2
58.7
46.2
Major BPS
44.9
-0.3
1.6
39
42.9
Major PPT
61.6
0.26
0.9
53.5
36.7
Minor 5ss
34.2
-1.8
3.6
46.8
48.5
Minor BPS
46.2
-0.3
1.8
51.8
45.1

Associated Gene:

Gene:
COX6A1
Ensembl Gene ID:
ENSAPLG00000014977
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015599
7282112 - 7283109
998