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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7326782_7326896_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7326782 - 7326896
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
CTGCGGGGCTCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCGCAT
U12 Branch Point Sequence:
CTCTCCGCATCC
Flanking Amino Acid:
VMRDPLTKRSRGFGFVTFMD
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
57.4
0.18
1.4
67.6
40.6
Major PPT
53.5
0.08
1.1
49
43.8
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
43.9
-0.4
2.4
57.93
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023986
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027091
7326424 - 7329581
3158