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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7332990_7343110_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7332990 - 7343110
Intron Length:
10121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAT
U12 Branch Point Sequence:
CTTGCAGTAACC
Flanking Amino Acid:
VKQYFEQFGKVDDAMLMFDK
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
70
0.5
1
59.3
39.1
Major PPT
89
0.88
0.6
84.1
23.9
Minor 5ss
35.3
-1.7
3.4
50.1
46.5
Minor BPS
48.4
-0.1
2.3
67.13
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030833
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028040
7331498 - 7351671
20174