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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7345207_7345682_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7345207 - 7345682
Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
GTCTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
CGGGTCTGACCT
Flanking Amino Acid:
IHFHEINNKMVECKKAQPKE
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
68.4
36.9
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
83
0.74
0.8
77
31.7
Minor 5ss
27.7
-2.6
3
31.6
37.6
Minor BPS
44.8
-0.3
1.8
56.42
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030833
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028040
7331498 - 7351671
20174