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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7347451_7348626_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7347451 - 7348626
Intron Length:
1176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCGTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGCAT
U12 Branch Point Sequence:
GGTTCCTAAGCT
Flanking Amino Acid:
IAPGYTYQFPEFRVERTPLP
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
62.7
0.32
1.4
75
39.9
Major PPT
80.2
0.68
0.8
77.9
35.9
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
58.9
0.36
2
77.81
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030833
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028040
7331498 - 7351671
20174