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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7348684_7351363_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7348684 - 7351363
Intron Length:
2680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTCCC
5'SS Class:
major
3'SS Sequence:
CCTTCCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCACAA
U12 Branch Point Sequence:
GGTCCCTGAGGT
Flanking Amino Acid:
PSAPVLPELTAIPLTAYGPM
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.3
70.1
38.5
Major BPS
45.3
-0.2
1.1
48.9
36.6
Major PPT
85.5
0.8
0.7
80
25.3
Minor 5ss
30.9
-2.2
2.7
37.3
39.8
Minor BPS
46.5
-0.1
2
64.56
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030833
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028040
7331498 - 7351671
20174