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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7358468_7358550_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7358468 - 7358550
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGCGTAGG
5'SS Class:
major
3'SS Sequence:
TGCTTCTCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTAAT
U12 Branch Point Sequence:
CTAACTCTAACC
Flanking Amino Acid:
KSLALLFLLSVGAASADVSP
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
59.9
46.4
Major BPS
69.2
0.48
1.3
69.7
44.2
Major PPT
79.1
0.65
0.8
77
31.7
Minor 5ss
28.2
-2.5
2.7
24.4
36.9
Minor BPS
54.4
0.12
1.7
64.68
40.7

Associated Gene:

Gene:
PLA2G1B
Ensembl Gene ID:
ENSAPLG00000013778
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014354
7358434 - 7360227
1794