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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7370454_7371142_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7370454 - 7371142
Intron Length:
689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCCGC
5'SS Class:
major
3'SS Sequence:
CTCTGCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
TCTATTATGACT
Flanking Amino Acid:
RLTELHGCTHRVFCLGCGDQ
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63
0.31
1.3
49.1
47.6
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
77.4
0.62
0.9
73.5
35.7
Minor 5ss
42.7
-0.8
3.2
60.2
44.3
Minor BPS
51.8
0.14
1.6
71.93
39.3

Associated Gene:

Gene:
SIRT4
Ensembl Gene ID:
ENSAPLG00000013628
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014188
7368817 - 7371648
2832