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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7378798_7401816_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7378798 - 7401816
Intron Length:
23019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
TTCCTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTTTTCTTCCTT
Flanking Amino Acid:
MDDLDALLADLEST
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
65.8
40.2
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
88.4
0.86
0.6
84.2
23.7
Minor 5ss
29.6
-2.3
2.7
28.8
35.5
Minor BPS
45.9
-0.2
3.6
82.74
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023537
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025989
7378785 - 7412269
33485