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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7402634_7404575_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7402634 - 7404575
Intron Length:
1942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTTGT
5'SS Class:
weak_major
3'SS Sequence:
CTTTTATTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCTCTTTTATT
Flanking Amino Acid:
PRASEEEHVYSFPNKQKSAE
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.2
71.4
41.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.5
0.82
0.7
85.4
28
Minor 5ss
62.5
0.42
2
76.4
38.9
Minor BPS
68.7
0.67
1.6
83.34
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023537
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025989
7378785 - 7412269
33485