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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7404716_7405086_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7404716 - 7405086
Intron Length:
371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
CCCCTTTCTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAG
U12 Branch Point Sequence:
TGTGTCTGAGCT
Flanking Amino Acid:
QHNPPSGFPADEASRSPSLP
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
49.8
-0
1.7
51.1
46.3
Major PPT
69.2
0.43
1
69.5
28.7
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
52
0.14
1.8
73.31
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023537
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025989
7378785 - 7412269
33485