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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7405289_7405806_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7405289 - 7405806
Intron Length:
518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
TTTTTCTTGTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAA
U12 Branch Point Sequence:
TGTACCTAAATG
Flanking Amino Acid:
DELESSVPSPVPAITVSQGE
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.1
69.1
41.9
Major BPS
63.9
0.35
1
63.9
30.3
Major PPT
87.4
0.84
0.8
88.7
28.3
Minor 5ss
36.4
-1.5
3.4
50
46.3
Minor BPS
59.1
0.15
1.8
64.88
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023537
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025989
7378785 - 7412269
33485