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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7405943_7410192_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7405943 - 7410192
Intron Length:
4250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCCCCAT
5'SS Class:
major
3'SS Sequence:
TGTCTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTCCTTGTTC
Flanking Amino Acid:
ELMASLSDFKTSSTISLISE
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.2
56
44.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
83.4
0.75
0.8
77.3
31.4
Minor 5ss
38.6
-1.3
3.3
55.9
48.3
Minor BPS
51.3
0.02
3.5
81.45
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023537
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025989
7378785 - 7412269
33485