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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7415450_7415793_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7415450 - 7415793
Intron Length:
344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCGA
5'SS Class:
major
3'SS Sequence:
GTCTTCCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCATAA
U12 Branch Point Sequence:
TCCTTCATAAGT
Flanking Amino Acid:
GACKKPIAGQVVTAMGKTWH
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
65
42.7
Major BPS
65
0.37
1
61.3
37
Major PPT
71.8
0.49
0.9
66.5
34.5
Minor 5ss
26.7
-2.7
2.9
32.1
42.4
Minor BPS
53
0.17
1.9
71.76
45.4

Associated Gene:

Gene:
PXN
Ensembl Gene ID:
ENSAPLG00000012909
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013484
7412753 - 7418929
6177