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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7415968_7416524_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7415968 - 7416524
Intron Length:
557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATTAA
U12 Branch Point Sequence:
TTCTTCTGAACA
Flanking Amino Acid:
CYYCNGPILDKVVTALDRTW
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
76.9
34.5
Major BPS
60.4
0.26
1.2
52.1
43.5
Major PPT
75.7
0.58
1
73.1
36.1
Minor 5ss
40.8
-1
3
53.8
43.6
Minor BPS
72.9
0.72
1.4
79.77
36.3

Associated Gene:

Gene:
PXN
Ensembl Gene ID:
ENSAPLG00000012909
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013484
7412753 - 7418929
6177