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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7422255_7422532_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7422255 - 7422532
Intron Length:
278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGGAG
5'SS Class:
major
3'SS Sequence:
CTTCTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTGACTTACCT
Flanking Amino Acid:
EIRDMLLANKVPAAARAGAI
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
63.9
42.4
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
87.9
0.85
0.7
80.6
31.4
Minor 5ss
27.2
-2.6
3.7
36.3
48.1
Minor BPS
62.7
0.48
1.9
84.76
41.8

Associated Gene:

Gene:
RPLP0
Ensembl Gene ID:
ENSAPLG00000012902
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013424
7421686 - 7424422
2737