About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7424819_7426600_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7424819 - 7426600
Intron Length:
1782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
CCCGTGCCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCGAAT
U12 Branch Point Sequence:
CCAGCCTGATGT
Flanking Amino Acid:
MAADTQISDTLKRFAV
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
74.9
35.3
Major BPS
60.8
0.27
1.3
69.7
35.5
Major PPT
65.6
0.35
0.9
61.6
35
Minor 5ss
27.6
-2.6
3
32.2
42.5
Minor BPS
42.1
-0.5
2
52.92
47.9

Associated Gene:

Gene:
GCN1
Ensembl Gene ID:
ENSAPLG00000010927
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011518
7423151 - 7467106
43956