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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7427394_7427950_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7427394 - 7427950
Intron Length:
557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCCCGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TATAACTTCACA
Flanking Amino Acid:
KLFCLTLHRYRDAASRRALQ
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
79.7
30.2
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
72
0.5
0.9
65.7
36.1
Minor 5ss
30.1
-2.3
2.6
34
41.5
Minor BPS
54.9
0.15
2
70.71
40.8

Associated Gene:

Gene:
GCN1
Ensembl Gene ID:
ENSAPLG00000010927
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011518
7423151 - 7467106
43956