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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7428083_7429316_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7428083 - 7429316
Intron Length:
1234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGGGAT
5'SS Class:
major
3'SS Sequence:
GTTTCCACTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
GTTTCCACTACA
Flanking Amino Acid:
SGISGRAGAPSKSSGSAALL
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
69.3
37.1
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
77.7
0.62
0.9
70.4
35
Minor 5ss
24.4
-2.9
3.6
36.9
47.7
Minor BPS
49.4
-0
2.1
70.14
41.2

Associated Gene:

Gene:
GCN1
Ensembl Gene ID:
ENSAPLG00000010927
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011518
7423151 - 7467106
43956