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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7429426_7430132_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7429426 - 7430132
Intron Length:
707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTTCT
5'SS Class:
major
3'SS Sequence:
TTTCCCTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTTCAT
U12 Branch Point Sequence:
TTTCCCTTGGCA
Flanking Amino Acid:
KRQGETWKKLVEVQCLLLLE
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74.1
37.2
Major BPS
67
0.42
1.4
71.4
45.1
Major PPT
79.7
0.67
0.9
76.8
31.7
Minor 5ss
41.6
-0.9
3.1
55.7
43.9
Minor BPS
49.5
-0
3.5
80.23
35.4

Associated Gene:

Gene:
GCN1
Ensembl Gene ID:
ENSAPLG00000010927
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011518
7423151 - 7467106
43956