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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7430232_7430317_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7430232 - 7430317
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCATTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTTTCTCATTA
Flanking Amino Acid:
VKKLNRLWKENQDLVDQYLS
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
80.1
30.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
81.9
0.72
0.8
83.2
26.9
Minor 5ss
40.1
-1.1
3.1
55
49.2
Minor BPS
59.7
0.3
1.8
75.01
37

Associated Gene:

Gene:
GCN1
Ensembl Gene ID:
ENSAPLG00000010927
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011518
7423151 - 7467106
43956