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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7431016_7431101_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7431016 - 7431101
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAAGA
5'SS Class:
major
3'SS Sequence:
GTTCCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
CTGTGCTGAGTG
Flanking Amino Acid:
SKTKPQKHVLDSCSPILRYV
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
0.9
69.5
36.5
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
83
0.74
0.8
76.8
31.7
Minor 5ss
27.5
-2.6
2.7
28.4
38
Minor BPS
43.2
-0.6
2.1
47.61
46.1

Associated Gene:

Gene:
GCN1
Ensembl Gene ID:
ENSAPLG00000010927
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011518
7423151 - 7467106
43956