Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7432347_7432751_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7432347 - 7432751

Intron Length:

405

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGATC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTAAA

U12 Branch Point Sequence:

ACTTTAGGAACT

Flanking Amino Acid:

VVAQKMSVLSGIGSLSHHVV

Intron Amino Acid Position:

365

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.9

0.89

0.8

82.1

Major BPS

68.7

0.47

0.9

67.9

Major PPT

97.2

1.06

0.5

96.4

12.2

Minor 5ss

31.4

-2.1

3.2

42.1

Minor BPS

45.3

-0.2

2.3

67.9

42.8

Associated Gene:

Gene:

GCN1

Ensembl Gene ID:

ENSAPLG00000010927

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011518

7423151 - 7467106

43956