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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7432851_7433130_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7432851 - 7433130
Intron Length:
280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTACTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
CCTGTGTTACTT
Flanking Amino Acid:
ELFIPFLQQEVHEGTLVHAV
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.2
31.9
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
74.1
0.54
0.9
66.2
40.5
Minor 5ss
33.9
-1.8
3.3
47.6
48
Minor BPS
42.7
-0.4
2.3
57.74
46.4

Associated Gene:

Gene:
GCN1
Ensembl Gene ID:
ENSAPLG00000010927
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011518
7423151 - 7467106
43956