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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7434993_7435775_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7434993 - 7435775
Intron Length:
783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
AAGTCCTTGATA
Flanking Amino Acid:
CRMSVIEGQTESKLSSFWQL
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.1
31.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
89
0.88
0.6
88.1
21.8
Minor 5ss
38.4
-1.3
3
45.7
43.4
Minor BPS
69.9
0.62
1.2
69.24
37.1

Associated Gene:

Gene:
GCN1
Ensembl Gene ID:
ENSAPLG00000010927
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011518
7423151 - 7467106
43956