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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7437407_7437569_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7437407 - 7437569
Intron Length:
163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTACGTAGA
5'SS Class:
major
3'SS Sequence:
TCTCAATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TATTTCTCAATT
Flanking Amino Acid:
HAQRLPESKVQQYHRALIAV
Intron Amino Acid Position:
563

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.1
0.4
1.1
63.2
43
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
80.8
0.69
0.8
77.3
35.6
Minor 5ss
36.2
-1.6
3
47.2
42.5
Minor BPS
71.6
0.76
1.4
85.18
35.1

Associated Gene:

Gene:
GCN1
Ensembl Gene ID:
ENSAPLG00000010927
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011518
7423151 - 7467106
43956