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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7439118_7439483_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7439118 - 7439483
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATAAAC
5'SS Class:
major
3'SS Sequence:
GTTTTCTTGATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
GTTTTCTTGATA
Flanking Amino Acid:
RLTAYTPENQSSMNAVGSLS
Intron Amino Acid Position:
722

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
73.1
31
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
75.7
0.58
1
72.9
37.5
Minor 5ss
28.4
-2.5
2.8
34.2
41.5
Minor BPS
74.5
0.77
1.1
78.41
31.5

Associated Gene:

Gene:
GCN1
Ensembl Gene ID:
ENSAPLG00000010927
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011518
7423151 - 7467106
43956