Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7440480_7440558_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7440480 - 7440558

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GAG|GCAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

GTTTCTCTTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTTAT

U12 Branch Point Sequence:

TTTCTCTTACAG

Flanking Amino Acid:

ESQIRKRLKELDNELETALG

Intron Amino Acid Position:

851

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

98.6

1.15

0.7

90.9

28.7

Major BPS

79.9

0.74

0.9

69.7

37.1

Major PPT

86.5

0.82

0.8

80.4

31.7

Minor 5ss

35.8

-1.6

4.1

57.8

46.8

Minor BPS

55.6

0.04

1.8

65.72

41.9

Associated Gene:

Gene:

GCN1

Ensembl Gene ID:

ENSAPLG00000010927

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011518

7423151 - 7467106

43956