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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7441398_7444564_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7441398 - 7444564
Intron Length:
3167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TTCCTTTTCACA
Flanking Amino Acid:
IPSRTGKGETGAAPLSAPAF
Intron Amino Acid Position:
969

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
72.3
37.6
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
86.7
0.83
0.7
82.7
25.9
Minor 5ss
33.2
-1.9
3
43.7
43.6
Minor BPS
54.8
0.14
1.7
67.58
39.4

Associated Gene:

Gene:
GCN1
Ensembl Gene ID:
ENSAPLG00000010927
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011518
7423151 - 7467106
43956