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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7445093_7445589_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7445093 - 7445589
Intron Length:
497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTCGGCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
GAATCTCTAATG
Flanking Amino Acid:
VIGTGSPRLQVLASNALTSL
Intron Amino Acid Position:
1057

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
80.5
33.9
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
70.8
0.47
1
65.8
39.7
Minor 5ss
31.4
-2.1
2.9
42.1
44.5
Minor BPS
51.3
-0.1
1.7
55.11
40

Associated Gene:

Gene:
GCN1
Ensembl Gene ID:
ENSAPLG00000010927
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011518
7423151 - 7467106
43956