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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7445734_7446373_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7445734 - 7446373
Intron Length:
640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGTGGG
5'SS Class:
major
3'SS Sequence:
TAAATTAATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGTAAATTAATT
Flanking Amino Acid:
CMNVRDAALRGLMELQMVLP
Intron Amino Acid Position:
1105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
58
47.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
67.4
0.39
1.1
64
45.5
Minor 5ss
30.3
-2.3
3.3
31
43.1
Minor BPS
56.1
0.27
1.8
76.3
39.7

Associated Gene:

Gene:
GCN1
Ensembl Gene ID:
ENSAPLG00000010927
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011518
7423151 - 7467106
43956