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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7446502_7446685_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7446502 - 7446685
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
GTATGTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTGAA
U12 Branch Point Sequence:
TTCTGTGTATGT
Flanking Amino Acid:
VEDEIQKLAERLWESMGLEL
Intron Amino Acid Position:
1147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
84.1
26.5
Major BPS
60.8
0.27
1
51.3
35.5
Major PPT
69.5
0.44
1
62.1
44.2
Minor 5ss
30.9
-2.2
3.5
46.6
48.7
Minor BPS
39.4
-0.7
2.6
62.39
48.2

Associated Gene:

Gene:
GCN1
Ensembl Gene ID:
ENSAPLG00000010927
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011518
7423151 - 7467106
43956