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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7446876_7447296_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7446876 - 7447296
Intron Length:
421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTCTGATGAAAT
Flanking Amino Acid:
LTEIYQEKLYRPPPVLDALG
Intron Amino Acid Position:
1211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
86.5
28.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
82.1
0.72
0.7
76.3
25.7
Minor 5ss
40.8
-1
2.8
57.5
39.6
Minor BPS
47
-0.1
2.2
71.47
44.8

Associated Gene:

Gene:
GCN1
Ensembl Gene ID:
ENSAPLG00000010927
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011518
7423151 - 7467106
43956