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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7449942_7450611_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7449942 - 7450611
Intron Length:
670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGAAC
5'SS Class:
major
3'SS Sequence:
TATGTTTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTCCTCTGACT
Flanking Amino Acid:
QDKKNFRRREGALFAFEMLC
Intron Amino Acid Position:
1437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
69.1
37.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
75.7
0.58
0.9
74.6
40.1
Minor 5ss
26.7
-2.7
2.9
25.6
36.9
Minor BPS
65
0.55
1.7
85.73
33.8

Associated Gene:

Gene:
GCN1
Ensembl Gene ID:
ENSAPLG00000010927
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011518
7423151 - 7467106
43956