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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7450734_7451039_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7450734 - 7451039
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTTGGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
CACCTTGTAAAT
Flanking Amino Acid:
FGDGNQYVREAADDCAKAVM
Intron Amino Acid Position:
1478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
64.2
0.32
1.7
73
31.8
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
43.1
-0.4
2
54.65
41.4

Associated Gene:

Gene:
GCN1
Ensembl Gene ID:
ENSAPLG00000010927
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011518
7423151 - 7467106
43956