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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7451155_7451924_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7451155 - 7451924
Intron Length:
770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGGACC
5'SS Class:
major
3'SS Sequence:
TCTTCATGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CTTTCTGTGATC
Flanking Amino Acid:
LEEESWRTKAGSVELLGAMA
Intron Amino Acid Position:
1516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1
64.9
39
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
73.6
0.53
0.9
68.5
36.3
Minor 5ss
39.8
-1.1
3
49.4
41.2
Minor BPS
53.5
0.09
2
68.56
38.2

Associated Gene:

Gene:
GCN1
Ensembl Gene ID:
ENSAPLG00000010927
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011518
7423151 - 7467106
43956