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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7452668_7453395_F

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7452668 - 7453395
Intron Length:
728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TAGTACTTAATC
Flanking Amino Acid:
GNMYSLTDQKDLAPYLPSVT
Intron Amino Acid Position:
1650

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
71.8
34.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
85.3
0.79
0.8
83.6
31.4
Minor 5ss
43.1
-0.8
3.1
57.8
47.2
Minor BPS
69
0.58
1.5
72.68
38.3

Associated Gene:

Gene:
GCN1
Ensembl Gene ID:
ENSAPLG00000010927
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011518
7423151 - 7467106
43956