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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7453751_7453859_F

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7453751 - 7453859
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TGACATTTATCA
Flanking Amino Acid:
SSVDRSGAAQGLAEVMAGLG
Intron Amino Acid Position:
1719

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
77.5
32.3
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
95.2
1.02
0.5
89
28.1
Minor 5ss
27.1
-2.6
2.9
31.6
42.4
Minor BPS
48.5
-0.1
1.7
59.76
39.5

Associated Gene:

Gene:
GCN1
Ensembl Gene ID:
ENSAPLG00000010927
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011518
7423151 - 7467106
43956