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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7454057_7454424_F

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7454057 - 7454424
Intron Length:
368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
CTTTCACAGACA
Flanking Amino Acid:
VGPIIPCILKALADENEFVR
Intron Amino Acid Position:
1785

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.9
36.9
Major BPS
77.7
0.69
1
81
30.2
Major PPT
81.7
0.71
0.9
80.3
31.7
Minor 5ss
42.2
-0.9
2.5
54.4
42.8
Minor BPS
45.6
-0.3
2.2
64.38
41.9

Associated Gene:

Gene:
GCN1
Ensembl Gene ID:
ENSAPLG00000010927
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011518
7423151 - 7467106
43956