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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_7455789_7456116_F

Intron Information:

Intron Rank:
46
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7455789 - 7456116
Intron Length:
328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGAAAC
5'SS Class:
major
3'SS Sequence:
TTTTGGGGGATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
AATTAAGTAATT
Flanking Amino Acid:
LASTCADKRTVAARTLGDLV
Intron Amino Acid Position:
1944

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
0.9
71.5
33.8
Major BPS
78.6
0.71
1
78.6
31
Major PPT
57.2
0.16
1.2
53.4
46
Minor 5ss
28.8
-2.4
2.8
35.7
40.8
Minor BPS
46.4
-0.1
2.3
70.03
40.6

Associated Gene:

Gene:
GCN1
Ensembl Gene ID:
ENSAPLG00000010927
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011518
7423151 - 7467106
43956